Patrick Gray

Patrick Gray

Assistant Research Professor in the School of Marine Sciences

Publications

You can also find my articles on my Google Scholar profile.

  1. Gray P.C., Boss E., Bourdin G., Mission Microbiome AtlantECO, Tara Pacific Consortium, Lehahn Y., (2025) Emergent patterns of patchiness reflect decoupling between ocean physics and biology. In press Nature Communications. BioRxiv: DOI: 10.1101/2024.05.24.595779 [in press]

  2. Gray P.C., Boss E., Prochaska J.X., Kerner H.R., Begouen-Demeaux, C., Lehahn Y. (2024) The Promise and Pitfalls of Machine Learning in Ocean Remote Sensing. Oceanography DOI: 10.5670/oceanog.2024.511 PDF

  3. Gray P.C., Sayvelev I., Cassar N., Levy M., Boss E.S., Lehahn Y., Bourdin G., Smith K.A., Windle A., Gronniger J., Floge S., Hunt D.E., Silsbe G., Johnson Z.I, Johnston D.W. (2024) Evidence for kilometer scale biophysical features at the Gulf Stream front. JGR: Oceans DOI: 10.1029/2023JC020526 PDF

  4. Bedford C., Rampe E., Thorpe M., Ewing R.,Mason K., Horgan B., Rudolph A., Lapotre M., Sinha P., Nachon M., Champion E., Berger L., Reid E., Gray P.C. (2024) The Geochemical and Mineralogical Signature of Glaciovolcanism Near Þórisjökull, Iceland, and its Implications for Glaciovolcanism on Mars. JGR: Planets DOI: 10.1029/2023JE008261 PDF

  5. Gronniger J., Gray P.C., Niebergall A.K., Johnson Z.I., Hunt D.E. (2023) Gulf Stream frontal eddy harbors a unique microbiome relative to surrounding waters. PLoS ONE. DOI: 10.1371/journal.pone.0293334 PDF

  6. Green K., Virdee M., Aviles-Rivero A., Cubaynes H., Fretwell P., Gray P.C., Johnston D., Schönlieb C.B., Torres L., Jackson J. (2023) Gray whale detection in satellite imagery using deep learning approaches. Remote Sensing for Ecology and Conservation. DOI: 10.1002/rse2.352 PDF

  7. Tavora J., Jiang B., Kiffney T., Bourdin G., Gray P.C., Sander de Carvalho S., Hesketh G., Schild K., Faria de Souza L., Brady D.C., and Boss E. (2023) Recipes for the derivation of water quality parameters using the high spatial resolution data from sensors on board Sentinel-2A, 2B and Landsat-5,7,8,9 satellites. Journal of Remote Sensing. DOI: 10.34133/remotesensing.0049 PDF

  8. Nardelli S.C., Gray P.C., Stammerjohn S.E., O. Schofield. (2023) Characterizing coastal phytoplankton seasonal succession patterns on the West Antarctic Peninsula. Limnology and Oceanography. DOI: 10.1002/lno.12314 PDF

  9. Nardelli S.C., Gray P.C., O. Schofield. (2023) A convolutional neural network to classify phytoplankton images along the West Antarctic Peninsula. Marine Technology Society Journal. DOI: 10.4031/MTSJ.56.5.8 PDF

  10. Gray P.C., Windle, A.E., Dale, J., Savelyev I.B., Johnson Z.I., Silsbe G.M., Larsen G.D., Johnston D.W. (2022) Robust ocean color from drones: viewing geometry, removing sky reflection, uncertainty analysis, and a survey of the Gulf Stream front. Limnology and Oceanography: Methods. DOI: 10.1002/lom3.10511 PDF

  11. Gray P.C., Larsen G.D., and Johnston D.W. (2021) Drones address an observational blind spot for biological oceanography. Frontiers in Ecology and Environment. DOI: 10.1002/fee.2472 PDF

  12. Gray P.C., Chamorro D.F., Ridge, J.T., Kerner, H.K., Ury, E.A., Johnston, D.W. 2021. Temporally Generalizable Land Cover Classification: A Recurrent Convolutional Neural Network Unveils Major Coastal Change through Time. Remote Sensing. DOI: 10.3390/rs13193953 PDF

  13. Spiers, E.M., Weber, J.M., Venigalla, C., Annex, A.M., Chen, C.P., Gray P.C., … [16 additional authors] (2021) Tiger: Concept Study for a New Frontiers Enceladus Habitability Mission. The Planetary Science Journal. DOI: 10.3847/PSJ/ac19b7 PDF

  14. Hayes M.C.; Gray P.C.; Harris G.; Sedgwick W.C.; Crawford V.D.; Chazal N.; Crofts S.; Johnston D.W. (2021) Drones and deep learning produce accurate and efficient monitoring of large-scale seabird colonies. Ornithological Applications. DOI: 10.1093/ornithapp/duab022 PDF

  15. Ridge, J.T., Gray, P.C., Windle A., Johnston, D.W. (2020) Deep learning for coastal resource conservation: automating detection of shellfish reefs. Remote Sensing in Ecology and Conservation. DOI: 10.1002/rse2.134 PDF

  16. Kerner H.R., Wagstaff K.L., Bue B.D., Gray P.C., Bell J.F., Amor H.B. (2019) Toward Generalized Change Detection on Planetary Surfaces with Convolutional Autoencoders and Transfer Learning. Journal of Selected Topics in Applied Earth Observations and Remote Sensing. DOI: 10.1109/JSTARS.2019.2936771 PDF

  17. Gray, P.C., Bierlich, K.C., Mantell, S.A., Goldbogen, J.A., Johnston, D.W. (2019) Drones and Convolutional Neural Networks Facilitate Automated and Accurate Cetacean Species Identification and Photogrammetry. Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.13246 PDF

  18. Gray, P.C., Fleishman, A.B., Klein, D.J., McKown, M.W., Bézy, V.S., Lohmann, K.J., Johnston, D.W. (2018) A Convolutional Neural Network for Detecting Sea Turtles in Drone Imagery. Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.13132 PDF

  19. Gray, P.C., Ridge, J.T., Poulin, S.K., Seymour, A.C., Schwantes, A.M., Swenson, J.J., Johnston, D.W. (2018) Integrating Drone Imagery into High Resolution Satellite Remote Sensing Assessments of Estuarine Environments. Remote Sensing. DOI: 10.3390/rs10081257 PDF